Books about Phylogenetic from Amazon.com

A comprehensive introduction to vascular plant phylogeny, the third edition of "Plant Systematics" reflects changes in the circumscription of many orders and families to represent monophyletic groups, following the most recent classification of the Angiosperm Phylogeny Group. Molecular taxonomic methods are fully presented, as are the results of many recent studies, both molecular and morphological..
Price: $75.96 [Notify me when price goes down.]

Phylogenetic Trees Made Easy helps the reader get started in creating phylogenetic trees from protein or nucleic acid sequence data. Although aimed at molecular and cell biologists, who may not be familiar with phylogenetic or evolutionary theory, it also serves students who may be familiar with phylogenetic theory but are unfamiliar with the tools used to apply that theory. The reader is led, step by step, through identifying sequences that are homologous to a sequence of interest, downloading these sequences from databases, creating multiple alignments, and using several different methods to construct trees. Learn More boxes present background on the various concepts and methods, and a website provides files needed for working through the tutorials in the text as well as additional software that facilitates some of the methods discussed. Key Changes to the Third Edition: * Over 90% of the text and screenshots are new. * A new program, MEGA, that has dramatically simplified and sped up the most tedious parts of making trees searching for and downloading sequences, aligning those sequences, and getting them into suitable formats is introduced as the primary tool for constructing trees. * PHYML, another new program that has sped up the Maximum Likelihood method by more than 100-fold, making it a practical alternative to other methods, is introduced. * Chapter 9 is devoted to a detailed method for reconstructing very ancient ancestral sequences, and software to facilitate that method is made available on the website. * Chapter 10 speaks to detecting adaptive evolution. * The final chapter comprises detailed instructions for working with programs on Macintosh, Windows, and Unix platforms..
Price: $34.66 [Notify me when price goes down.]

Did you know that you are more closely related to a mushroom than to a daisy? That crocodiles are closer to birds than to lizards? That dinosaurs are still among us? That the terms "fish," "reptiles," and "invertebrates" do not indicate scientific groupings? All this is the result of major changes in classification, whose methods have been totally revisited over the last thirty years.

Modern classification, based on phylogeny, no longer places humans at the center of nature. Groups of organisms are no longer defined by their general appearance, but by their different individual characteristics. Phylogeny, therefore, by showing common ancestry, outlines a tree of evolutionary relationships from which one can retrace the history of life.

This book diagrams the tree of life according to the most recent methods of classification. By showing how life forms arose and developed and how they are related, The Tree of Life presents a key to the living world in all its dazzling variety.

(20070701).
Price: $31.96 [Notify me when price goes down.]

"Of all the literature I use while preparing field guides for the Food and Agriculture Organization of the United Nations, Nelson's Fishes of the World is, by far, the one I refer to most often. [This] book is a standard reference . . . I continue to use it extensively in the ichthyology courses I teach, particularly in laboratory sessions."
-Kent E. Carpenter Old Dominion University

"Fishes of the World is a unique and essential resource for anyone seriously interested in the diversity and evolution of fishes. The family accounts provide quick summaries of current knowledge on all groups of living fishes and many key fossil taxa. It is a required work for every student in my laboratory."
-William E. Bemis Kingsbury Director of Shoals Marine Laboratory, Cornell University

"Only classics are known by the single name of their author, and certainly [Nelson's book] has for four editions been such a book for all those who seek an accessible, up-to-date, readable reference on fish classification. Once again, Nelson presents a balanced view of the sometimes tumultuous, but ever-exciting, study of the phylogenetic relationships and classification of fishes. In doing so, Nelson makes an excellent case for organismal biology, highlighting the many and varied morphological characters we use to diagnose fish taxa and differentiate among the 515 families of living species."
-Lynne R. Parenti Curator of Fishes and Research Scientist, National Museum of Natural History, Smithsonian Institution

Fishes of the World, Fourth Edition is the updated edition of a true classic in the field. A unique presentation of a modern, cladistically based classification of all the major living and fossil fish groups, this indispensable reference helps scientists and others identify and classify specimens, make familial connections, understand the evolution of fishes, and springboard into further research.

The taxonomy of fishes presented includes the anatomical characteristics, distribution, common and scientific names, and phylogenetic relationships for all 515 families of living fishes. Packed with representative species drawings and information on phylogentic relationships, this informative Fourth Edition features:
* Both fossil and extant species
* More than 500 illustrations
* Fully vetted scientific and common names
* An extensive bibliography.
Price: $89.99 [Notify me when price goes down.]

The study of evolution at the molecular level has given the subject of evolutionary biology a new significance Phylogenetic 'trees' of gene sequences are a powerful tool for recovering evolutionary relationships among species, and can be used to answer a broad range of evolutionary and ecological questions. They are also beginning to permeate the medical sciences. In this book, the authors approach the study of molecular evolution with the phylogenetic tree as a central metaphor. This will equip students and professionals with the ability to see both the evolutionary relevance of molecular data, and the significance evolutionary theory has for molecular studies. The book is accessible yet sufficiently detailed and explicit so that the student can learn the mechanics of the procedures discussed. The book is intended for senior undergraduate and graduate students taking courses in molecular evolution/phylogenetic reconstruction. It will also be a useful supplement for students taking wider courses in evolution, as well as a valuable resource for professionals.

• First student textbook of phylogenetic reconstruction which uses the tree as a central metaphor of evolution.
  
• Chapter summaries and annotated suggestions for further reading.
  
• Worked examples facilitate understanding of some of the more complex issues.
  
• Emphasis on clarity and accessibility.

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Price: $49.17 [Notify me when price goes down.]

No question in theoretical biology has been more perennially controversial or perplexing than "What is a species?" Recent advances in phylogenetic theory have called into question traditional views of species and spawned many concepts that are currently competing for general acceptance. Once the subject of esoteric intellectual exercises, the "species problem" has emerged as a critically important aspect of global environmental concerns. Completion of an inventory of biodiversity, success in conservation, predictive knowledge about life on earth, management of material resources, formulation of scientifically credible public policy and law, and more depend upon our adoption of the "right" species concept. Quentin D. Wheeler and Rudolf Meier present a debate among top systematic biology theorists to consider the strengths and weaknesses of five competing concepts. Debaters include (1) Ernst Mayr (Biological Species Concept), (2) Rudolf Meier and Rainer Willmann (Hennigian species concept), (3) Brent Mishler and Edward Theriot (one version of the Phylogenetic Species Concept), (4) Quentin Wheeler and Norman Platnick (a competing version of the Phylogenetic Species Concept), and (5) E. O. Wiley and Richard Mayden (the Evolutionary Species Concept). Each author or pair of authors contributes three essays to the debate: first, a position paper with an opening argument for their respective concept of species; second, a counterpoint view of the weakness of competing concepts; and, finally, a rebuttal of the attacks made by other authors. This unique and lively debate format makes the comparative advantages and disadvantages of competing species concepts clear and accessible in a single book for the first time, bringing to light numerous controversies in phylogenetic theory, taxonomy, and philosophy of science that are important to a wide audience. Species Concepts and Phylogenetic Theory will meet a need among scientists, conservationists, policy-makers, and students of biology for an explicit, critical evaluation of a large and complex literature on species. An important reference for professionals, the book will prove especially useful in classrooms and discussion groups where students may find a concise, lucid entrée to one of the most complex questions facing science and society..
Price: $29.99 [Notify me when price goes down.]

This book presents the statistical methods that are useful in the study of molecular evolution and illustrates how to use them in actual data analysis It is appropriate for graduate students and researchers (assuming a basic knowledge of evolution, moecular biology, and elementary statistics), allowing many investigators to incorporate refined statistical analysis of large-scale data in their own work..
Price: $54.43 [Notify me when price goes down.]

The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification.

This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments.

Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

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Price: $40.39 [Notify me when price goes down.]

Reconstructing phylogenetic trees from DNA sequences has become a popular exercise in many branches of biology, and here the well-known geneticist John Avise explains why. Molecular phylogenies provide a genealogical backdrop for interpreting the evolutionary histories of many other types of biological traits (anatomical, behavioral, ecological, physiological, biochemical and even geographical). Guiding readers on a natural history tour along dozens of evolutionary pathways, the author describes how creatures ranging from microbes to elephants came to possess their current phenotypes. Essential reading for college students, professional biologists and anyone interested in natural history and biodiversity, this book is packed with fascinating examples of evolutionary puzzles from across the animal kingdom; how the toucan got its enormous bill, how reptiles grow back lost limbs and why Arctic fish don't freeze..
Price: $44.65 [Notify me when price goes down.]

The Phylogenetic Handbook is a broad introduction to the theory and practice of nucleotide and amino acid phylogenetic analysis. As an unique feature of this book, each chapter contains an extensive practical section, in which step-by-step exercises on real data sets introduce the most widely used phylogeny software including CLUSTAL, PHYLIP, PAUP*, DAMBE, TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, MEGA2, PAML and BOOTSCANNING. The book provides a strong background in basic topics: the use of sequence databases, alignment algorithms, tree-building methods, estimation of genetic distances, and testing models of evolution..
Price: $61.00 [Notify me when price goes down.]