Books about Phylogenetic from Amazon.com

Phylogenetic Trees Made Easy helps the reader get started in creating phylogenetic trees from protein or nucleic acid sequence data. Although aimed at molecular and cell biologists, who may not be familiar with phylogenetic or evolutionary theory, it also serves students who may be familiar with phylogenetic theory but are unfamiliar with the tools used to apply that theory. The reader is led, step by step, through identifying sequences that are homologous to a sequence of interest, downloading these sequences from databases, creating multiple alignments, and using several different methods to construct trees. Learn More boxes present background on the various concepts and methods, and a website provides files needed for working through the tutorials in the text as well as additional software that facilitates some of the methods discussed. Key Changes to the Third Edition: * Over 90% of the text and screenshots are new. * A new program, MEGA, that has dramatically simplified and sped up the most tedious parts of making trees searching for and downloading sequences, aligning those sequences, and getting them into suitable formats is introduced as the primary tool for constructing trees. * PHYML, another new program that has sped up the Maximum Likelihood method by more than 100-fold, making it a practical alternative to other methods, is introduced. * Chapter 9 is devoted to a detailed method for reconstructing very ancient ancestral sequences, and software to facilitate that method is made available on the website. * Chapter 10 speaks to detecting adaptive evolution. * The final chapter comprises detailed instructions for working with programs on Macintosh, Windows, and Unix platforms..
Price: $35.59 [Notify me when price goes down.]

Plant Systematics: A Phylogenetic Approach, Second Edition is an introductory text that incorporates phylogenetic principles and methods throughout—from the careful explanation of phylogenetic methods and principles in the initial two chapters to the taxonomic survey of vascular plant families in the last two chapters.

Orders and families are recircumscribed to represent monophyletic groups, largely following the most recent classification of the Angiosperm Phylogeny Group. The sources of taxonomic evidence are discussed, including morphology, anatomy, embryology, chromosomes, palynology, secondary plant compounds, proteins, and DNA. Molecular taxonomic methods are fully presented, and throughout the book reference is made to the results of recent studies, both molecular and morphological. A chapter on the history of plant classification puts current systematic methods in a historical context. Issues relating to variation in plant populations and species, including discussion of speciation, species concepts, polyploidy, hybridization, breeding systems, and introgression are carefully considered. Botanical nomenclature and field and herbarium methods are discussed in two appendices. New to the Second Edition are a chapter presenting an overview of the phylogeny of the green plants (with an emphasis on the vascular plants), a detailed glossary of botanical and biological terms, and coverage of 16 additional families of vascular plants. All chapters have been thoroughly updated, taking into account recent taxonomic methods and hypotheses.

The text is copiously illustrated, using in large part the informative analytical drawings developed as part of the Generic Flora of the Southeastern United States project. The text is accompanied by a much expanded CD-ROM, containing over 2,200 color photos illustrating the diagnostic characters of (and variability within) the vascular plant families covered in the text, including many images showing floral and fruit dissections..
Price: $87.19 [Notify me when price goes down.]

Did you know that you are more closely related to a mushroom than to a daisy? That crocodiles are closer to birds than to lizards? That dinosaurs are still among us? That the terms "fish," "reptiles," and "invertebrates" do not indicate scientific groupings? All this is the result of major changes in classification, whose methods have been totally revisited over the last thirty years.

Modern classification, based on phylogeny, no longer places humans at the center of nature. Groups of organisms are no longer defined by their general appearance, but by their different individual characteristics. Phylogeny, therefore, by showing common ancestry, outlines a tree of evolutionary relationships from which one can retrace the history of life.

This book diagrams the tree of life according to the most recent methods of classification. By showing how life forms arose and developed and how they are related, The Tree of Life presents a key to the living world in all its dazzling variety.

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Price: $31.96 [Notify me when price goes down.]

The increasing availability of molecular and genetic databases coupled with the growing power of computers gives biologists opportunities to address new issues, such as the patterns of molecular evolution, and re-assess old ones, such as the role of adaptation in species diversification.

This book integrates a wide variety of data analysis methods into a single and flexible interface: the R language. This open source language is available for a wide range of computer systems and has been adopted as a computational environment by many authors of statistical software. Adopting R as a main tool for phylogenetic analyses will ease the workflow in biologists' data analyses, ensure greater scientific repeatability, and enhance the exchange of ideas and methodological developments.

Graduate students and researchers in evolutionary biology can use this book as a reference for data analyses, whereas researchers in bioinformatics interested in evolutionary analyses will learn how to implement these methods in R. The book starts with a presentation of different R packages and gives a short introduction to R for phylogeneticists unfamiliar with this language. The basic phylogenetic topics are covered: manipulation of phylogenetic data, phylogeny estimation, tree drawing, phylogenetic comparative methods, and estimation of ancestral characters. The chapter on tree drawing uses R's powerful graphical environment. A section deals with the analysis of diversification with phylogenies, one of the author's favorite research topics. The last chapter is devoted to the development of phylogenetic methods with R and interfaces with other languages (C and C++). Some exercises conclude these chapters.

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Price: $41.77 [Notify me when price goes down.]

The Phylogenetic Handbook is a broad introduction to the theory and practice of nucleotide and amino acid phylogenetic analysis. As an unique feature of this book, each chapter contains an extensive practical section, in which step-by-step exercises on real data sets introduce the most widely used phylogeny software including CLUSTAL, PHYLIP, PAUP*, DAMBE, TREE-PUZZLE, TREECON, SplitsTree, TreeView, SimPlot, MEGA2, PAML and BOOTSCANNING. The book provides a strong background in basic topics: the use of sequence databases, alignment algorithms, tree-building methods, estimation of genetic distances, and testing models of evolution..
Price: $72.98 [Notify me when price goes down.]

"Of all the literature I use while preparing field guides for the Food and Agriculture Organization of the United Nations, Nelson's Fishes of the World is, by far, the one I refer to most often. [This] book is a standard reference . . . I continue to use it extensively in the ichthyology courses I teach, particularly in laboratory sessions."
-Kent E. Carpenter Old Dominion University

"Fishes of the World is a unique and essential resource for anyone seriously interested in the diversity and evolution of fishes. The family accounts provide quick summaries of current knowledge on all groups of living fishes and many key fossil taxa. It is a required work for every student in my laboratory."
-William E. Bemis Kingsbury Director of Shoals Marine Laboratory, Cornell University

"Only classics are known by the single name of their author, and certainly [Nelson's book] has for four editions been such a book for all those who seek an accessible, up-to-date, readable reference on fish classification. Once again, Nelson presents a balanced view of the sometimes tumultuous, but ever-exciting, study of the phylogenetic relationships and classification of fishes. In doing so, Nelson makes an excellent case for organismal biology, highlighting the many and varied morphological characters we use to diagnose fish taxa and differentiate among the 515 families of living species."
-Lynne R. Parenti Curator of Fishes and Research Scientist, National Museum of Natural History, Smithsonian Institution

Fishes of the World, Fourth Edition is the updated edition of a true classic in the field. A unique presentation of a modern, cladistically based classification of all the major living and fossil fish groups, this indispensable reference helps scientists and others identify and classify specimens, make familial connections, understand the evolution of fishes, and springboard into further research.

The taxonomy of fishes presented includes the anatomical characteristics, distribution, common and scientific names, and phylogenetic relationships for all 515 families of living fishes. Packed with representative species drawings and information on phylogentic relationships, this informative Fourth Edition features:
* Both fossil and extant species
* More than 500 illustrations
* Fully vetted scientific and common names
* An extensive bibliography.
Price: $70.00 [Notify me when price goes down.]

During the last ten years, remarkable progress has occurred in the study of molecular evolution. Among the most important factors that are responsible for this progress are the development of new statistical methods and advances in computational technology. In particular, phylogenetic analysis of DNA or protein sequences has become a powerful tool for studying molecular evolution. Along with this developing technology, the application of the new statistical and computational methods has become more complicated and there is no comprehensive volume that treats these methods in depth. Molecular Evolution and Phylogenetics fills this gap and present various statistical methods that are easily accessible to general biologists as well as biochemists, bioinformatists and graduate students. The text covers measurement of sequence divergence, construction of phylogenetic trees, statistical tests for detection of positive Darwinian selection, inference of ancestral amino acid sequences, construction of linearized trees, and analysis of allele frequency data. Emphasis is given to practical methods of data analysis, and methods can be learned by working through numerical examples using the computer program MEGA2 that is provided..
Price: $53.43 [Notify me when price goes down.]

Reconstructing phylogenetic trees from DNA sequences has become a popular exercise in many branches of biology, and here the well-known geneticist John Avise explains why. Molecular phylogenies provide a genealogical backdrop for interpreting the evolutionary histories of many other types of biological traits (anatomical, behavioral, ecological, physiological, biochemical and even geographical). Guiding readers on a natural history tour along dozens of evolutionary pathways, the author describes how creatures ranging from microbes to elephants came to possess their current phenotypes. Essential reading for college students, professional biologists and anyone interested in natural history and biodiversity, this book is packed with fascinating examples of evolutionary puzzles from across the animal kingdom; how the toucan got its enormous bill, how reptiles grow back lost limbs and why Arctic fish don't freeze..
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New methodological developments in morphological phylogenetics---including approaches for analyzing ontogenetic data, fossils, morphometric characters, intraspecific variation, and hybrid taxa---are summarized in this book. The actual practice of morphological phylogenetics is also evaluated, especially in regard to its controversial use in the study of the evolution of morphological characters..
Price: $60.36 [Notify me when price goes down.]

-- Biodiversity

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